Source: GWASDB

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs1003878
rs1003878
TSBP1 ; TSBP1-AS1
0.882 0.200 6 32332045 stop gained G/A snv 0.19 0.23
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1041981
rs1041981
LTA ; LOC100287329
0.667 0.520 6 31573007 missense variant C/A snv 0.35 0.38
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1046089
rs1046089
PRRC2A
0.882 0.200 6 31635190 missense variant G/A snv 0.36 0.40
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs10466455
rs10466455
LOC102723568
1.000 0.080 11 34759389 intergenic variant T/C snv 0.39
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 1 2014 2014
dbSNP: rs10484399
rs10484399 		0.851 0.240 6 27566749 intergenic variant A/G snv 5.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1077393
rs1077393
BAG6
0.882 0.200 6 31642752 non coding transcript exon variant A/G snv 0.44
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs10911628
rs10911628 		1.000 0.080 1 184680369 intergenic variant C/A snv 9.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 1 2014 2014
dbSNP: rs10946940
rs10946940 		1.000 0.080 6 27592808 upstream gene variant A/C;G snv
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 1 2014 2014
dbSNP: rs11073328
rs11073328
FAM98B
1.000 0.080 15 38472642 intron variant C/T snv 9.3E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 1 2014 2014
dbSNP: rs11229
rs11229
PRRC2A
0.851 0.280 6 31635993 synonymous variant A/G snv 0.14 0.17
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs11655550
rs11655550 		1.000 0.080 17 39453870 upstream gene variant T/C snv 0.16
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 1 2014 2014
dbSNP: rs11697848
rs11697848 		1.000 0.080 20 49958778 downstream gene variant C/T snv 3.6E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.800 1.000 1 2014 2014
dbSNP: rs1233579
rs1233579 		0.925 0.160 6 28744886 intergenic variant A/G snv 7.2E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1235162
rs1235162
GABBR1
0.827 0.280 6 29569447 intron variant A/G snv 6.0E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs13194504
rs13194504 		0.925 0.120 6 28662914 intergenic variant G/A snv 5.1E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs13194781
rs13194781
H2BC15
1.000 0.080 6 27847861 intron variant A/G snv 5.3E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs13195509
rs13195509
BTN2A1
1.000 0.080 6 26463432 missense variant G/A snv 5.7E-02 6.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs13211507
rs13211507
PGBD1
0.882 0.200 6 28289600 intron variant T/C snv 6.4E-02
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1419183
rs1419183
ZSCAN26
1.000 0.080 6 28275017 intron variant A/C snv 0.17
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1480380
rs1480380
HLA-DMB
0.763 0.360 6 32945469 intron variant C/T snv 0.11
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1634718
rs1634718
MUC22
0.925 0.160 6 31005088 regulatory region variant A/G snv 0.20
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs175597
rs175597
H2BC15
0.925 0.160 6 27842848 intron variant T/C snv 0.11
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs185819
rs185819
TNXB
0.851 0.200 6 32082290 missense variant T/A;C;G snv 8.2E-06; 0.58; 4.1E-06
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs1980493
rs1980493
BTNL2 ; TSBP1-AS1
0.776 0.400 6 32395438 intron variant T/C snv 0.13
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014
dbSNP: rs200953
rs200953
H1-5
1.000 0.080 6 27869489 upstream gene variant T/C snv 0.12
CUI: C0024141
Disease: Lupus Erythematosus, Systemic
Lupus Erythematosus, Systemic 		0.700 1.000 1 2014 2014